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Multiomic tutorial

Open Ragagnin opened this issue 2 years ago • 5 comments

Hi, I'm trying to use scGPT for multiomics studies using Single Cell Multiome ATAC + Gene Expression as database for training.

Could you provide a tutorial on how to use scGPT for use in a multiomics database?

Thank you very much in advance

Ragagnin avatar Sep 05 '23 19:09 Ragagnin

Hello, I would also like to know how to use scGPT for multiomic integration. Thank you!

@Ragagnin Did you maybe find out or still waiting for response?

milka1g avatar Sep 18 '23 13:09 milka1g

Sorry for the waiting, will try to put it out by Thursday, Sept. 21.

subercui avatar Sep 18 '23 13:09 subercui

Thank you @subercui !

milka1g avatar Sep 19 '23 06:09 milka1g

Very excited to see this thread, thanks for the support on bringing this work to the community @subercui !

dkrozelle avatar Sep 21 '23 14:09 dkrozelle

Thank you! and please give me two more days 😄 It has been a busy week and I am trying to provide cleaner code for the tutorial this time.

subercui avatar Sep 22 '23 22:09 subercui