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On the Result ID Conversion and Memory Consumption of Zero Sample Cell Annotation

Open haolangchen opened this issue 8 months ago • 2 comments

Hello, I would like to use zero samples model (best_model. pt about 33M human) to directly predict cell types without fine-tuning the model

However, I found that the final result only outputs the id (1, 2, 3) for the celltype

image

How can I convert the output ID into a cell type to type through a dictionary

Can you provide an the idtotype dictionary for the zero sample model (best_model. pt)

In addition, I run best.model. pt on 7000 cells and found that the memory consumption was very high. I want to know where the problem lies. Is this memory consumption normal。 Using GPUs still requires significant resources

39a0210f9d143b9088f7d819d2c34030

haolangchen avatar Jun 19 '24 10:06 haolangchen