scGPT must be need GPU?

[honghh2018]

Hi developer, Thanks to develop the great tool to annotate the single cell, I wander that this scGPT must be need GPU on centos7.9, and i hadn't the GPU, what about CPU to use this scGPT?

any advice would be appreciated. Best, hanhuihong

[kocemir]

Hi, from my understanding and past experience, if you do not use fast transformer option ( includes flashattention and fast transformer with linear option), you can use cpu. To avoid to have problem, you have to exclude the option of pip install flashattention==xxx ( where xxx is the version) from your installation pipeline.