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Pretrain with scATAC data

Open WhenMelancholy opened this issue 1 year ago • 1 comments

Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downstream tasks?

WhenMelancholy avatar Mar 30 '24 12:03 WhenMelancholy

Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downstream tasks?

I face related problem, I want to pre-train a new foundation model with my own datasets using scGPT model architecture, but I do not know the method

fscdc avatar May 31 '24 03:05 fscdc