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How to make ATAC counts as bins

Open ttgump opened this issue 11 months ago • 4 comments

Hi, I have a question of using scGPT on ATAC data. The typical scATAC-seq has binarized values 0 and 1, so how to make the ATAC counts as bins? Should we only make the counts to only 2 bins: 0-bin and 1bin? Thanks.

ttgump avatar Mar 15 '24 10:03 ttgump