Clean up repository, so that it's easier to manage.

[orowith2os]

Fixes https://github.com/bottlesdevs/dependencies/issues/147 This still needs index.yml to be updated, and some work to be sure that it'll work.

Type of change

• [ ] New dependency
• [ ] Manifest fix
• [x] Other

Whas This Tested Using a Local Repository?

• [ ] Yes
• [x] No