Error in matam_assembly on Docker when running example file

[rachelleLim]

Hi, Thanks so much for this program, it seems really cool! :) My working computer is a Mac, so I've been using Docker to run matam. I use an interactive session of matam as follows (docker run -it bonsaiteam/matam) and then run the following code: matam_assembly.py -i examples/16sp_simulated_dataset/16sp.art_HS25_pe_100bp_50x.fq I then get the following error: INFO - === MATAM assembly === INFO - CMD: /matam/scripts/matam_assembly.py --cpu 1 --max_memory 10000 --best 10 --evalue 1.00e-05 --score_threshold 0.90 --coverage_threshold 0 --min_identity 1.00 --min_overlap_length 50 --min_read_node 1 --min_overlap_edge 1 --quorum 0.51 --read_correction auto --contig_coverage_threshold 20 --min_scaffold_length 500 --out_dir /matam/matam_assembly --ref_db /matam/db/SILVA_128_SSURef_NR95 --input_fastx /matam/examples/16sp_simulated_dataset/16sp.art_HS25_pe_100bp_50x.fq INFO - === Input === INFO - Input file: /matam/examples/16sp_simulated_dataset/16sp.art_HS25_pe_100bp_50x.fq INFO - Input file reads nb: 11650 reads INFO - === Reads mapping against ref db === CRITICAL - The last command returns a non-zero return code: 1 Non-zero return code

Would it be possible to get a fix on this? We have no linux computers in my lab and this seems really useful! Thank you!

Additional info: Docker version: Docker version 18.03.1-ce, build 9ee9f40 Matam Image: bonsaiteam/matam latest 75143b82cd20 5 months ago 4.02GB