Bola Khalil
Bola Khalil
### 😵 Describe the installation problem I tried to run `conda install pyg -c pyg` expected behaviour: installing the following file linux-64/pyg-2.5.0-py311_torch_2.2.0_cu121.tar.bz2 instead it is trying to install pyg/linux-64::pyg-2.5.0-py311_torch_2.2.0_cpu ###...
### Describe the bug Unlike the other models, when I train TransE model it fails after few epochs (around 19) with an error `torch.cuda.OutOfMemoryError` This was tested on several GPUs...
Video link: https://youtu.be/KJxmC5GCWe4 Video Title: Modeling Aleatoric and Epistemic Uncertainty - Aleksander Molak | PyData Global 2021 Code Link: https://github.com/AlxndrMlk/PyDataGlobal2021 Contents: 00:00 Welcome! 01:00 Agenda 02:55 Why model Uncertainty? 05:35...
Hello, When I run "mvn package" the build is failing with the following error message: ` [INFO] --- maven-shade-plugin:3.2.4:shade (default) @ rdkit-index --- [ERROR] The project main artifact does not...
Hello, I encountered an error when trying to generate a dotplot in the "Differential Abundance" tab. In the UI: it shows in red: `Error: 'list' object cannot be coerced to...
Hello, I encountered an error when trying to generate a heatmap using the "Differential Abundance" tab. Steps to Reproduce: 1. Navigate to the Differential Abundance tab. 2. After running the...
Hello, I tried to adjust the order of samples on the x-axis for the QC & intensity plots from here  but unfortunately this is not reflected in the graph...
**Describe the bug** While attempting to run VST (Variance Stabilizing Transformation) normalization using AlphaPept, I encountered several issues that suggest the normalization process might not be functioning as intended. Issue...
I suggest the inclusion of DEqMS in the differential expression algorithms https://www.bioconductor.org/packages/release/bioc/html/DEqMS.html the package exists in R and can be maybe called through rpy2 package (I could potentially help with...
As raised in #88 Here is a simple update to include recal_model Regards, Bola