rbokeh
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20 hours ago •
bokeh
bokeh
error install r using conda
I was able to successfully install R, but when I try to install R-essentials using conda at command prompt:
conda install -c r r-essentials
I get the following error:
C:\Windows>echo **** post_link.bat for m2w64-p11-kit ****
**** post_link.bat for m2w64-p11-kit ****
The system cannot find the path specified.
The system cannot find the path specified.
The system cannot find the path specified.
The system cannot find the path specified.
ERROR conda.core.link:_execute_actions(317): An error occurred while installing package 'r::r-rbokeh-0.5.0-r3.3.2_0'.
CondaError: Cannot link a source that does not exist. C:\Users\ddiaz\AppData\Local\Continuum\Anaconda2\pkgs\r-rbokeh-0.5.0-r3.3.2_0\R\library\rbokeh\htmlwidgets\lib\bokehjs\bokeh.min.js
I am on Windows 10, Python 3.5, and just updated to Anaconda v1.6.0 and still receiving this error.
Please show the output from conda info and conda list --show-channel-urls.
If it's possible to assign this to me go ahead, it'll help ensure I don't lose track of it.
@mingwandroid it's not, unless you get added to @bokeh/dev maybe make an issue in another repo you are a maintainer on, and link back?
Current conda install:
platform : win-64
conda version : 4.3.4
conda is private : False
conda-env version : 4.3.4
conda-build version : 2.0.2
python version : 2.7.12.final.0
requests version : 2.12.4
root environment : C:\Users\ddiaz\AppData\Local\Continuum\Anaconda2 (writable)
default environment : C:\Users\ddiaz\AppData\Local\Continuum\Anaconda2\envs\Py3.5
envs directories : C:\Users\ddiaz\AppData\Local\Continuum\Anaconda2\envs
package cache : C:\Users\ddiaz\AppData\Local\Continuum\Anaconda2\pkgs
channel URLs : https://conda.anaconda.org/r/win-64
https://conda.anaconda.org/r/noarch
https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\ddiaz\.condarc
offline mode : False
user-agent : conda/4.3.4 requests/2.12.4 CPython/2.7.12 Windows/10 Windows/10.0.10586
#
_license 1.1 py35_1 defaults
_nb_ext_conf 0.3.0 py35_0 defaults
alabaster 0.7.9 py35_0 defaults
anaconda 4.3.0 np111py35_0 defaults
anaconda-clean 1.0.0 py35_0 defaults
anaconda-client 1.6.0 py35_0 defaults
anaconda-navigator 1.4.3 py35_0 defaults
appdirs 1.4.0 <pip>
argcomplete 1.0.0 py35_1 defaults
astroid 1.4.9 py35_0 defaults
astropy 1.3 np111py35_0 defaults
babel 2.3.4 py35_0 defaults
backports 1.0 py35_0 defaults
beautifulsoup4 4.5.3 py35_0 defaults
bitarray 0.8.1 py35_1 defaults
blaze 0.10.1 py35_0 defaults
bokeh 0.12.4 py35_0 defaults
boto 2.45.0 py35_0 defaults
bottleneck 1.2.0 np111py35_0 defaults
bzip2 1.0.6 vc14_3 [vc14] defaults
cffi 1.9.1 py35_0 defaults
chardet 2.3.0 py35_0 defaults
chest 0.2.3 py35_0 defaults
click 6.7 py35_0 defaults
cloudpickle 0.2.2 py35_0 defaults
clyent 1.2.2 py35_0 defaults
colorama 0.3.7 py35_0 defaults
CommonMark 0.5.4 <pip>
comtypes 1.1.2 py35_0 defaults
configobj 5.0.6 py35_0 defaults
console_shortcut 0.1.1 py35_1 defaults
contextlib2 0.5.4 py35_0 defaults
cryptography 1.7.1 py35_0 defaults
curl 7.52.1 vc14_0 [vc14] defaults
cycler 0.10.0 py35_0 defaults
cython 0.25.2 py35_0 defaults
cytoolz 0.8.2 py35_0 defaults
daft 0.0.4 <pip>
dask 0.13.0 py35_0 defaults
datashape 0.5.4 py35_0 defaults
decorator 4.0.11 py35_0 defaults
dill 0.2.5 py35_0 defaults
docutils 0.13.1 py35_0 defaults
dynd-python 0.7.2 py35_0 defaults
entrypoints 0.2.2 py35_0 defaults
et_xmlfile 1.0.1 py35_0 defaults
fastcache 1.0.2 py35_1 defaults
filelock 2.0.6 py35_0 defaults
flask 0.12 py35_0 defaults
flask-cors 3.0.2 py35_0 defaults
freetype 2.5.5 vc14_2 [vc14] defaults
get_terminal_size 1.0.0 py35_0 defaults
gevent 1.2.1 py35_0 defaults
greenlet 0.4.11 py35_0 defaults
h5py 2.6.0 np111py35_2 defaults
hdf5 1.8.15.1 vc14_4 [vc14] defaults
heapdict 1.0.0 py35_1 defaults
icu 57.1 vc14_0 [vc14] defaults
idna 2.2 py35_0 defaults
imagesize 0.7.1 py35_0 defaults
ipykernel 4.5.2 py35_0 defaults
ipython 5.1.0 py35_0 defaults
ipython_genutils 0.1.0 py35_0 defaults
ipywidgets 5.2.2 py35_1 defaults
isort 4.2.5 py35_0 defaults
itsdangerous 0.24 py35_0 defaults
jdcal 1.3 py35_0 defaults
jedi 0.9.0 py35_1 defaults
jinja2 2.9.4 py35_0 defaults
joblib 0.10.3 <pip>
jpeg 9b vc14_0 [vc14] defaults
jsonschema 2.5.1 py35_0 defaults
jupyter 1.0.0 py35_3 defaults
jupyter_client 4.4.0 py35_0 defaults
jupyter_console 5.0.0 py35_0 defaults
jupyter_core 4.2.1 py35_0 defaults
lazy-object-proxy 1.2.2 py35_0 defaults
libdynd 0.7.2 0 defaults
libpng 1.6.27 vc14_0 [vc14] defaults
libpython 2.0 py35_0 defaults
libtiff 4.0.6 vc14_3 [vc14] defaults
llvmlite 0.15.0 py35_0 defaults
locket 0.2.0 py35_1 defaults
lxml 3.7.2 py35_0 defaults
m2w64-bwidget 1.9.10 2 defaults
m2w64-bzip2 1.0.6 6 defaults
m2w64-expat 2.1.1 2 defaults
m2w64-fftw 3.3.4 6 defaults
m2w64-flac 1.3.1 3 defaults
m2w64-gcc-libgfortran 5.3.0 6 defaults
m2w64-gcc-libs 5.3.0 7 defaults
m2w64-gcc-libs-core 5.3.0 7 defaults
m2w64-gettext 0.19.7 2 defaults
m2w64-gmp 6.1.0 2 defaults
m2w64-gsl 2.1 2 defaults
m2w64-libiconv 1.14 6 defaults
m2w64-libjpeg-turbo 1.4.2 3 defaults
m2w64-libogg 1.3.2 3 defaults
m2w64-libpng 1.6.21 2 defaults
m2w64-libsndfile 1.0.26 2 defaults
m2w64-libtiff 4.0.6 2 defaults
m2w64-libvorbis 1.3.5 2 defaults
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 defaults
m2w64-libxml2 2.9.3 3 defaults
m2w64-mpfr 3.1.4 4 defaults
m2w64-pcre 8.38 2 defaults
m2w64-speex 1.2rc2 3 defaults
m2w64-speexdsp 1.2rc3 3 defaults
m2w64-tcl 8.6.5 3 defaults
m2w64-tk 8.6.5 3 defaults
m2w64-tktable 2.10 5 defaults
m2w64-wineditline 2.101 5 defaults
m2w64-xz 5.2.2 2 defaults
m2w64-zlib 1.2.8 10 defaults
markupsafe 0.23 py35_2 defaults
matplotlib 2.0.0 np111py35_0 defaults
menuinst 1.4.4 py35_0 defaults
mingw 4.7 1 defaults
mistune 0.7.3 py35_0 defaults
mkl 2017.0.1 0 defaults
mkl-service 1.1.2 py35_3 defaults
mpmath 0.19 py35_1 defaults
msys2-conda-epoch 20160418 1 defaults
multipledispatch 0.4.9 py35_0 defaults
nb_anacondacloud 1.2.0 py35_0 defaults
nb_conda 2.0.0 py35_0 defaults
nb_conda_kernels 2.0.0 py35_0 defaults
nbconvert 4.2.0 py35_0 defaults
nbformat 4.2.0 py35_0 defaults
nbpresent 3.0.2 py35_0 defaults
nbsphinx 0.2.13 <pip>
networkx 1.11 py35_0 defaults
nltk 3.2.2 py35_0 defaults
nose 1.3.7 py35_1 defaults
notebook 4.3.1 py35_1 defaults
numba 0.30.1 np111py35_0 defaults
numexpr 2.6.1 np111py35_2 defaults
numpy 1.11.3 py35_0 defaults
numpydoc 0.6.0 py35_0 defaults
numpydoc 0.6.0 <pip>
odo 0.5.0 py35_1 defaults
openpyxl 2.4.1 py35_0 defaults
openssl 1.0.2k vc14_0 [vc14] defaults
packaging 16.8 <pip>
pandas 0.19.2 np111py35_1 defaults
pandoc 1.19.2.1 0 defaults
partd 0.3.7 py35_0 defaults
path.py 10.0 py35_0 defaults
pathlib2 2.2.0 py35_0 defaults
patsy 0.4.1 py35_0 defaults
pep8 1.7.0 py35_0 defaults
pickleshare 0.7.4 py35_0 defaults
pillow 4.0.0 py35_0 defaults
pip 9.0.1 py35_1 defaults
pkginfo 1.3.2 py35_0 defaults
ply 3.9 py35_0 defaults
prompt_toolkit 1.0.9 py35_0 defaults
psutil 5.0.1 py35_0 defaults
py 1.4.32 py35_0 defaults
pyasn1 0.1.9 py35_0 defaults
pycosat 0.6.1 py35_1 defaults
pycparser 2.17 py35_0 defaults
pycrypto 2.6.1 py35_5 defaults
pycurl 7.43.0 py35_2 defaults
pyflakes 1.5.0 py35_0 defaults
pygments 2.1.3 py35_0 defaults
pylint 1.6.4 py35_1 defaults
pymc3 3.0 <pip>
pyopenssl 16.2.0 py35_0 defaults
pyparsing 2.1.10 <pip>
pyparsing 2.1.4 py35_0 defaults
pyqt 5.6.0 py35_2 defaults
pytables 3.2.2 np111py35_4 defaults
pytest 3.0.5 py35_0 defaults
python 3.5.2 0 defaults
python-dateutil 2.6.0 py35_0 defaults
pytz 2016.10 py35_0 defaults
pywin32 220 py35_2 defaults
pyyaml 3.12 py35_0 defaults
pyzmq 16.0.2 py35_0 defaults
qt 5.6.2 vc14_3 [vc14] defaults
qtawesome 0.4.3 py35_0 defaults
qtconsole 4.2.1 py35_2 defaults
qtpy 1.2.1 py35_0 defaults
r 3.3.2 r3.3.2_0 r
r-base 3.3.2 0 r
r-boot 1.3_18 r3.3.2_0 r
r-class 7.3_14 r3.3.2_0 r
r-cluster 2.0.5 r3.3.2_0 r
r-codetools 0.2_15 r3.3.2_0 r
r-foreign 0.8_67 r3.3.2_0 r
r-kernsmooth 2.23_15 r3.3.2_0 r
r-lattice 0.20_34 r3.3.2_0 r
r-mass 7.3_45 r3.3.2_0 r
r-matrix 1.2_7.1 r3.3.2_0 r
r-mgcv 1.8_16 r3.3.2_0 r
r-nlme 3.1_128 r3.3.2_0 r
r-nnet 7.3_12 r3.3.2_0 r
r-recommended 3.3.2 r3.3.2_0 r
r-rpart 4.1_10 r3.3.2_0 r
r-spatial 7.3_11 r3.3.2_0 r
r-survival 2.40_1 r3.3.2_0 r
recommonmark 0.4.0 <pip>
requests 2.12.4 py35_0 defaults
rope 0.9.4 py35_1 defaults
scikit-image 0.12.3 np111py35_1 defaults
scikit-learn 0.18.1 np111py35_1 defaults
scipy 0.18.1 np111py35_1 defaults
seaborn 0.7.1 py35_0 defaults
setuptools 34.2.0 <pip>
setuptools 27.2.0 py35_1 defaults
simplegeneric 0.8.1 py35_1 defaults
singledispatch 3.4.0.3 py35_0 defaults
sip 4.18 py35_0 defaults
six 1.10.0 py35_0 defaults
snowballstemmer 1.2.1 py35_0 defaults
sockjs-tornado 1.0.3 py35_0 defaults
sphinx 1.5.1 py35_0 defaults
spyder 3.1.2 py35_0 defaults
sqlalchemy 1.1.5 py35_0 defaults
statsmodels 0.6.1 np111py35_1 defaults
sympy 1.0 py35_0 defaults
Theano 0.8.2 <pip>
tk 8.5.18 vc14_0 [vc14] defaults
toolz 0.8.2 py35_0 defaults
tornado 4.4.2 py35_0 defaults
tqdm 4.11.2 <pip>
traitlets 4.3.1 py35_0 defaults
unicodecsv 0.14.1 py35_0 defaults
vs2015_runtime 14.0.25123 0 defaults
wcwidth 0.1.7 py35_0 defaults
werkzeug 0.11.15 py35_0 defaults
wheel 0.29.0 py35_0 defaults
widgetsnbextension 1.2.6 py35_0 defaults
win_unicode_console 0.5 py35_0 defaults
wrapt 1.10.8 py35_0 defaults
xlrd 1.0.0 py35_0 defaults
xlsxwriter 0.9.6 py35_0 defaults
xlwings 0.10.2 py35_0 defaults
xlwt 1.2.0 py35_0 defaults
zlib 1.2.8 vc14_3 [vc14] defaults
In case it's helpful, I was able to successfully install r-essentials using these same commands on my Mac this morning.
Can you try conda update conda then try again? The early releases of the 4.3 series were very broken on Windows unfortunately.