Resolving the measurement uncertainty paradox in ecological management

• Authors: Milad Memarzadeh, Carl Boettiger

Contents

• :file_folder: Manuscript: R Markdown source document for manuscript. Includes code to reproduce for figures from tables generated by the analysis.
• :file_folder: Appendix: R Markdown source documents for both appendices, containing all necessary R code to generate all results presented in both the manuscript and appendices.
• :file_folder: data: Data generated in the analysis. Includes .csv tables shown in the figures, and the .policyx XML files generated by running the SARSOP algorithm.
• :file_folder: reviews: Encrypted reviews (copywrite of the reviewers)

Reproducibility

This repository is organized as a reproducible research compendium. Click the button above to explore in an interactive RStudio session. Binder uses rocker-project.org Docker images to ensure a consistent and reproducible computational environment. These Docker images can also be used locally with the following commands.

docker build --tag pompd .
docker run -it -p 8888:8888 pompd

Then click on the link in the terminal, which will open a Jupyter start page. Start RStudio in the menu on the top right with "New > RStudio".

To explore the code locally, clone or download this repository into RStudio or your perferred environment and install the compendium by running devtools::install(). To install additional dependencies used only in formatting the figures, use devtools::install(dep=TRUE).

This compendium is checked by Travis-CI continuous integration. Click the button above for details.