bmill3r

icon indicating a website link https://bmill3r.github.io/

icon company Johns Hopkins Univeristy icon location Baltimore, MD icon location Computational Biologist with experience in Spatial Transcriptomics and Cancer Epigenetics. Wet lab/molecular -> computational 🧬🧫🔬💻

Results 5 issues of bmill3r

Error: Unable to allocate 932. GiB for an array with shape (353762, 353762)

Hello, First, thanks for this great tool! I am trying to apply it to a somewhat large single cell resolution vizgen dataset of human lung cancer (Vizgen_Human_LungCancer_Patient1) from the MERSCOPE...

Error in DIALOGUE1(rA = rA, k = k, main = main, results.dir = results.dir, : Cannot run DIALOGUE with less than 5 samples.

Hello and thanks again for your help. I have successfully made a list of `cell.type` objects that I am passing to `DIALOGUE.run`, and I am using the FOV as the...

Definitions for arguments in `DIALOGUE.run`

Hello, I'm looking through the arguments in `DIALOGUE.run` to make sure that I am applying the tool properly but i noticed that some of the arguments are not defined. Can...

Error: Unable to allocate 932. GiB for an array with shape (353762, 353762)

1 comment

Hello, First, thanks for this great tool! I am trying to apply it to a somewhat large single cell resolution vizgen dataset of human lung cancer (Vizgen_Human_LungCancer_Patient1) from the MERSCOPE...

How to incorporate additional covariate matrices

Hello, Thanks so much for this great tool! I am interested in applying SPARK-X to some large spatial datasets and would also like to incorporate additional covariate matrices, such as...