pTuneos
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INDELs VEP anntotation Consequence is missense_variant
https://github.com/bm2-lab/pTuneos/blob/e6cfd0e1b57bf04fe60baee40efe4f3b0c8d56f3/src/core/VariantCallingFormat/VCFprocessor.py#L72
For INDELs, it seems that no Consequence is missense_variant ?