Blake Caldwell

Failure with kernel 4.11.0-13-generic and MLNX OFED 4.1

1

Hello--I'm trying to get Infiniswap to work on 4.11 to perhaps see if there is a performance benefit from improvements in the linux block layer over 3.13, but I'm getting...

MRG: docs for hnn-core integration

2

Please merge this once a release has been created for the HNN-integration. Users will be directed to download the new version.

Integrate hnn-core for running simulations

7

We have been internally discussing this WIP for a few months; time to put it up on github. The [hnn-core](https://github.com/jonescompneurolab/hnn-core) project is a more flexible way to run NEURON (Python)...

Spectral timescale is not computed before 50 ms

2

Spectral data is not computed near zero for edge-effects, but it's not also chopped for edge effects at the end of the simulation. If the scale is manually adjusted to...

remove Spikes and ExtInput from spikefn.py

2

Depends on #232 Both of these classes can be removed if the hnn-core `Spike` class is relied upon.

When combined with evoked inputs, the rhythmic inputs don't show up. It's just the evoked inputs. A key in the legend appears, however.

When multiple data files are loaded, it is not clear which one will be optimized to

1

This is a problem because it is not currently possible to remove a specific data file.

add functionality for running batch simulations

19

Enable users to run a non-interactive batch of simulations of the HNN model by specifying a set of parameters values to use. This could be used for sweeping a range...

move analysis code from HNN GUI to start hnn_core.analysis submodule

2

**Purpose:** To make code that was previously only in [HNN GUI](https://github.com/jonescompneurolab/hnn) dual-purpose and serve for the analysis of simulations run by `hnn-core` from the command-line. **Rationale:** Since HNN GUI will...