Bryce Kille
Bryce Kille
> I installed parsnp 1) via conda as part of a pipeline I want to use which brings its own envs. After recieving the error below: 2) via conda (bioconda)...
Can you try the 1.5 release? We've changed the binary to be more compatible w/ other OSs
Hi @valery-shap, How large is the xmfa file? The coordinates of the LCB are in the header of each record within the LCB. The header has the following format ```...
Which version of python are you running?
@Nits11 Sorry about these issues. I haven't seen this error before. Are these errors from the provided examples in the repo? What OS are you running on? There seem to...
@Nits11 Think I got it figured out. Try the latest release package or building from source to test it out. It will be a couple days until the bugfix makes...
wrt the second error, that should be fixed in the most recent update. Where are you installing from? The culprit line `File "/apps/parsnp/1.5.0/bin/parsnp", line 1277, in result = pool.map_async(parallelPhiWrapper,tasks).get(sys.maxsize)` has...
wrt the first error, I am not immediately sure what is going on. It looks like the parsnp aligner is running fine (there is nothing in the output message that...
Hi @valeriaR89, thanks for using Parsnp and reporting this issue! Unfortunately Parsnp v1.2 is no longer supported, so I can't help much with the issue you are currently facing. However,...
@valeriaR89 > I tried to install parsnp via conda following your advice, but in my personal laptop (WSL2) I had this error message "failed with repodata from current_repodata.json, will retry...