TCAG-WGS-CNV-workflow icon indicating copy to clipboard operation
TCAG-WGS-CNV-workflow copied to clipboard

Published 20 hours ago • verified publisher icon bjtrost
→

Metadata

Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods

Results 2 TCAG-WGS-CNV-workflow issues
Sort by recently updated
recently updated
newest added

inquiry about VCF module

2 comment

Hi, In MANTA.py or LUMPY.py, a module named VCF was used. I wonder how to get this module? Cause I cannot find a VCF.py that matched , and pip also...

singzyu avatar singzyu

Merging ERDS and CNVnator files error

7 comment

Hi, I followed the script process_cnvs.erds+.sh, and I get the following error. Could you please help me out with it? **/scratch/SOFTWARE/TCAG-WGS-CNV-workflow/format_cnvnator_results.py /scratch/SOFTWARE/TCAG-WGS-CNV-workflow/format_erds_results.py /scratch/SOFTWARE/TCAG-WGS-CNV-workflow/merge_cnvnator_results.py /scratch/SOFTWARE/TCAG-WGS-CNV-workflow/merge_erds_results.py /scratch/SOFTWARE/TCAG-WGS-CNV-workflow/add_features.py /scratch/SOFTWARE/TCAG-WGS-CNV-workflow/hg19_gap.bed Set-up.. Found erds/original, creating...

ghausiabegum avatar ghausiabegum

← Metadata

39
Stars
17
Forks
Watchers

Owner

verified publisher icon bjtrost

Metadata

Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods

Back