pyodesys

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is it possible to get the subroutine which can give the result of each step of Bulirsch_stoer solver? I would like to use pyodesys to help me solve odes by...

Jinhui0507

minor issue - Depends on pycodeexport (but not listed anywhere)

2

I went through all the steps to install this with pip, but couldn't get it to work tests worked fine for pycvodes, but failed for pyodesys (just the native part)...

dlivitz

new installation, but don't pass the test

6

============================= test session starts ============================== platform linux2 -- Python 2.7.15, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 rootdir: /home/nightwing collected 266 items anaconda3/envs/pyodesys/lib/python2.7/site-packages/pyodesys/native/tests/test_cvode.py F [ 0%] FFFFFFFFFFFFFFFFFFFxFFFFFFFFFFFF [ 12%] anaconda3/envs/pyodesys/lib/python2.7/site-packages/pyodesys/native/tests/test_gsl.py F [ 12%] FFFFFFFFFFFFFF...

WuShichao

Native odesys ignores provided parameters if it is based on SymbolicSys created by chempy

4

I tried [your example on native odesys](http://hera.physchem.kth.se/~pyodesys/branches/master/examples/_bench_native_odesys_multi.html). Providing different parameters leads to different concentrations as it should. Now I noticed that if I construct the `odesys` using chempy, the results...

niklastoe

Tests fail due to a missing extra: pycvodes

1

``` ___________________________________________________________ ERROR collecting pyodesys/native/tests/test_odeint.py ___________________________________________________________ ImportError while importing test module '/usr/ports/math/py-pyodesys/work-py27/pyodesys-0.12.3/pyodesys/native/tests/test_odeint.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: pyodesys/native/__init__.py:14: in from .cvode import NativeCvodeSys pyodesys/native/cvode.py:18:...

yurivict

pytest should be in test_requires, not in install_requires

1

yurivict

- [ ] Support for DAE systems (through `IDAS` from sundials) - [ ] `OdeSys.solve_bvp` method (and an alias for `solve_ivp = integrate`) - [ ] time integration through PETSc...

bjodah

In order to make source distribution free of Cython dependency, the source distribution (sdist) couldalso contain "cythonized" .cpp files.

bjodah