ANN-SoLo
ANN-SoLo copied to clipboard
bittremieux
Spectral library searching using approximate nearest neighbor techniques.
Hi, I'm attempting to install ANN-SoLo in a new conda environment. When I run pip install, I get the following error ``` Building wheels for collected packages: ann-solo Building wheel...
To try: - [ ] Intensity correspondence for first three prefix/suffix ions. (Rationale: these are more reproducible than ions further away from the termini.)
Read library spectra from various library formats: - [X] Full SpectraST support (sptxt). - [X] Mascot Generic support (MGF). - [ ] BiblioSpec support (blib). See #2. - [ ]...
Consider storing the metadata in the HDF5 file as well, instead of a separate config file. Having a self-contained HDF5 file will facilitate the portability of the library files, rather...
[ANN-SoLo is now included in the PSI-MS-CV.](https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo#L22124) We can use the correct CV term in the mzTab output now instead of the more general one.
As spectrum prediction tools are becoming increasingly more accurate, in case a spectral library for a specific proteome is not available, we can accurately simulate a spectral library instead. Implement...
Currently we use feature hashing to convert spectra to vectors. Instead, [Gaussian random projections](https://github.com/bittremieux/falcon/issues/10) might give a similar performance at lower dimensionalities, which would speed up searching and reduce the...
Metadata
Owner
Metadata
Spectral library searching using approximate nearest neighbor techniques.