.. image:: https://raw.githubusercontent.com/biotite-dev/ammolite/master/doc/static/assets/ammolite_logo_s.png :alt: Ammolite logo :align: center

Ammolite - From Biotite to PyMOL and back again

This package enables the transfer of structure related objects from Biotite <https://www.biotite-python.org/>_ to PyMOL <https://pymol.org/>_ for visualization, via PyMOL's Python API:

• Import AtomArray and AtomArrayStack objects into PyMOL - without intermediate structure files.
• Convert PyMOL objects into AtomArray and AtomArrayStack instances.
• Use Biotite's boolean masks for atom selection in PyMOL.
• Display images rendered with PyMOL in Jupyter notebooks.

Have a look at this example <https://ammolite.biotite-python.org/examples/gallery/heme_complex.html>_:

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.. image:: https://raw.githubusercontent.com/biotite-dev/ammolite/master/doc/demo/demo.gif :alt: ammolite demo

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