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Published 20 hours ago • verified publisher icon biothings

add incidence rates in TCGA data

Open andrewsu opened this issue 9 years ago • 2 comments

andrewsu avatar Jan 05 '15 21:01 andrewsu

@andrewsu can you please locate the particular data file or the download page?

newgene avatar Sep 28 '18 20:09 newgene

TCGA data can be accessed/downloaded from https://portal.gdc.cancer.gov/. Not sure if they provide a pre-summarized file of variant frequencies by cancer type, or if we would have to download the raw data and summarize ourselves... I would hope/guess that the former exists, but not sure... Jeon, can you dig around to see what you can find?

andrewsu avatar Sep 28 '18 21:09 andrewsu