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snpeff annotation switch to use GRCh37 and GRCh38 reference genomes

Open newgene opened this issue 5 years ago • 1 comments

Currently, we use "hg19" and "hg38" reference genomes (from UCSC) to produce snpeff annotations. The result misses "gene_id" field (the value is the same as "gene_name"). We can switch to use GRCh37 and GRCh38 reference genomes available here:

https://sourceforge.net/projects/snpeff/files/databases/v4_3/

Also we could upgrade the snpeff version we used too.

newgene avatar Sep 26 '18 00:09 newgene

see also #112

newgene avatar Apr 28 '21 22:04 newgene