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report all REVEL scores from dbNSFP

Open andrewsu opened this issue 7 months ago • 1 comments

Reported in an email to the mailing list:

I have a question for you about the REVEL scores, REVEL scores are transcript-specific, and dbSNFP updated their site in early 2022 to include all REVEL scores and link the transcripts to them, however I'm not seeing multiple scores available in the JSON output by myvariant.info.

Example variant: CA415086302

This variant has multiple REVEL scores,

image

However the myvariant.info section for this variant only displays the 0.173 value, https://myvariant.info/v1/variant/chrX:g.153693944C%3EA?assembly=hg38&format=html.

Can you help me understand if we can get the various REVEL scores and their respective transcripts from myvariant.info? dbSNFP does provide the multiple scores, I've attached a download of their output for this variant.

Presumably an update of our dbNSFP parser is required...

andrewsu avatar Nov 15 '23 06:11 andrewsu