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add CCDS mapping and annotation

Open newgene opened this issue 2 years ago • 0 comments

The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations.

https://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi

The mapping from CCDS ids to gene ids can be found from:

  • https://ftp.ncbi.nlm.nih.gov/pub/CCDS (human and mouse)

    e.g. in CCDS_current.txt file

or from

Since we might have already parsed RefSeq files, the RefSeq option might be a bit more efficient to get the data into MyGene.info

newgene avatar Dec 06 '21 22:12 newgene