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Published 20 hours ago • verified publisher icon biosustain
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Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

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Integrate setup script from tutorial in the workflow

The installation script mentioned in the readme should be integrated to the workflow with the ability to pin versions of the dependencies: https://github.com/NBChub/umetaflow_tutorial/tree/main

matinnuhamunada avatar matinnuhamunada

ThermoRawFileParser Error

Having an issue with the ThermoRawFileParser. ``` Standard output: Running: mono .snakemake/conda/5624a2a9a937aa833db817288853595e_/bin/ThermoRawFileParser.exe -i=data/raw/20231113_Ac-C18_POS_UMETAB404_Blank_02.raw --output_file=data/mzML/20231113_Ac-C18_POS_UMETAB404_Blank_02.mzML -f=2 -e 2023-11-20 15:00:12 INFO Started parsing data/raw/20231113_Ac-C18_POS_UMETAB404_Blank_02.raw 2023-11-20 15:00:13 INFO Processing 4114 MS scans 10%...

drboothtj avatar drboothtj

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verified publisher icon biosustain

Metadata

Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

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