croissance
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Unable to generate figure
I am facing the following error. Need your guidance
sajjad@sajjad-ThinkStation-P910:~/Downloads$ croissance --figures hhh.tsv 2022-11-28 09:39:48 croissance INFO Reading curves from 'hhh.tsv 2022-11-28 09:39:48 croissance INFO Collected a total of 8 growth curves 2022-11-28 09:39:48 croissance INFO Annotating growth curves using 1 threads 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '0': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '600': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '1200': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '1800': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '2400': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '3000': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '3600': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance ERROR Unhandled exception while annotating '4200': 2022-11-28 09:39:48 croissance ERROR Traceback (most recent call last): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/main.py", line 44, in call 2022-11-28 09:39:48 croissance ERROR name=name, 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 125, in estimate_growth 2022-11-28 09:39:48 croissance ERROR for phase in _find_growth_phases(smooth_series, window=n_hours): 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/init.py", line 186, in _find_growth_phases 2022-11-28 09:39:48 croissance ERROR first_derivative = savitzky_golay(curve, window, 3, deriv=1) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/anaconda3/lib/python3.7/site-packages/croissance/estimation/util.py", line 15, in savitzky_golay 2022-11-28 09:39:48 croissance ERROR index=series.index, data=savgol_filter(series.values, *args, **kwargs) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 335, in savgol_filter 2022-11-28 09:39:48 croissance ERROR coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta) 2022-11-28 09:39:48 croissance ERROR File "/home/sajjad/.local/lib/python3.7/site-packages/scipy/signal/_savitzky_golay.py", line 97, in savgol_coeffs 2022-11-28 09:39:48 croissance ERROR raise ValueError("polyorder must be less than window_length.") 2022-11-28 09:39:48 croissance ERROR ValueError: polyorder must be less than window_length. 2022-11-28 09:39:48 croissance INFO Writing annotated curves to 'hhh.output.tsv' 2022-11-28 09:39:48 croissance INFO Writing PDFs to 'hhh.output.pdf' 2022-11-28 09:39:48 croissance INFO Done ..