pyobo

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https://www.uniprot.org/docs/subcell.txt

cthoyt

cthoyt

http://prot-shiny-vm.broadinstitute.org:3838/ptmsigdb-app/

cthoyt

cthoyt

https://github.com/cBioPortal/oncotree/blob/master/scripts/ontology_to_ontology_mapping_tool/ontology_mappings.txt

cthoyt

Issues with PubChem name/id mappings

1

Using the PR branch #88, I tried a couple of different ways of getting a `pubchem.compound` name-to-id mapping data structure. ```python from pyobo import get_name_id_mapping get_name_id_mapping('pubchem.compound') ``` throws ```python NoOboFoundry:...

bgyori

ICDO Xrefs

1

Okay they're not really xrefs, since it claims the relationship is "related to", but since this file is hidden in an NCI FTP server, maybe nobody ever saw it before...

cthoyt

See list on https://github.com/ropensci/webchem

cthoyt

cthoyt

Many Wikidata equivalences are listed through the "exact match" property rather than through properties specifically referring to identifiers from a given resource. Get them!

cthoyt