bioperl-run

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ecoli.nt not available from ftp://ncbi.nlm.nih.gov, causes t/Tools/Run/StandaloneBlast.t to fail

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--- Author Name: **Joel Martin** (Joel Martin) Original Redmine Issue: 2908, https://redmine.open-bio.org/issues/2908 Original Date: 2009-09-01 Original Assignee: Bioperl Guts --- ecoli.nt is no longer in ftp://ftp.ncbi.nih.gov/blast/db/FASTA without this a number...

cjfields

Add Amap, Kalign and Probcon Quiet option

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--- Author Name: **Nathan S.** (Nathan S.) Original Redmine Issue: 2127, https://redmine.open-bio.org/issues/2127 Original Date: 2006-10-26 Original Assignee: Bioperl Guts --- Figure out if Amap, Kalign and Probcon can have a...

cjfields

mumsa wrapper

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--- Author Name: **Albert Vilella** (Albert Vilella) Original Redmine Issue: 2070, https://redmine.open-bio.org/issues/2070 Original Date: 2006-08-11 Original Assignee: Bioperl Guts --- Time permits, I intend to write a wrapper for MUMSA...

cjfields

Implement a seqgen wrapper in bioperl-run

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--- Author Name: **Albert Vilella** (Albert Vilella) Original Redmine Issue: 1891, https://redmine.open-bio.org/issues/1891 Original Date: 2005-11-03 Original Assignee: Bioperl Guts --- http://evolve.zoo.ox.ac.uk/software.html?id=seqgen (1) Should call seqgen with the basics (2) Should...

cjfields

Wrappers for ExaML, ExaBayes, *BEAST

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Hi, not sure if this is the right place to ask but we have been writing some Bio::Tools::Run::Phylo::\* wrappers (for the above-mentioned programs) that we would like to contribute to...

rvosa