negbio2 icon indicating copy to clipboard operation
negbio2 copied to clipboard

Directions for installing in google colab

Open kchurchwell opened this issue 1 year ago • 0 comments

I'm having trouble running in google colab

  1. !/content/negbio2/negbio/negbio_pipeline neg --output=/content/negbio2/ /content/negbio2/1.xml

gives this error: /bin/bash: /content/negbio2/negbio/negbio_pipeline: No such file or directory

  1. !python /content/negbio2/negbio/negbio_pipeline neg --output=/content/negbio2/ /content/negbio2/1.xml

gives this error: python3: can't open file '/content/negbio2/negbio/negbio_pipeline': [Errno 2] No such file or directory

  1. !python /content/negbio2/negbio/negbio_pipeline.py neg2 --output=/content/negbio2/ /content/negbio2/1.xml

gives this error: Traceback (most recent call last): File "/content/negbio2/negbio/negbio_pipeline.py", line 24, in from negbio.cli_utils import parse_args ModuleNotFoundError: No module named 'negbio'

kchurchwell avatar Nov 11 '22 01:11 kchurchwell