BuddySuite
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Error report: DBBuddy
21dac56ac10b185accd18c843f0efe3a
1
# DatabaseBuddy: 1.3.0
# Function: live_shell
# Python: 3.6.5 |Anaconda, Inc.| (default, Apr 29 2018, 16:14:56) [GCC 7.2.0]
# Platform: linux
# User: rk7rOY1amm
# Date: 2018-06-01
ValueError: Premature end of features table, marker '//' found
File "DatabaseBuddy.py", line 2349, in launch_live_shell
LiveShell(dbbuddy, temp_file)
File "DatabaseBuddy.py", line 1438, in __init__
self.cmdloop()
File "cmd.py", line 138, in cmdloop
stop = self.onecmd(line)
File "cmd.py", line 217, in onecmd
return func(arg)
File "DatabaseBuddy.py", line 1715, in do_fetch
retrieve_sequences(self.dbbuddy)
File "DatabaseBuddy.py", line 715, in retrieve_sequences
refseq.fetch_sequences("nucleotide")
File "DatabaseBuddy.py", line 1160, in fetch_sequences
for rec in SeqIO.parse(self.results_file.get_handle("r"), "gb"):
File "__init__.py", line 617, in parse
for r in i:
File "Scanner.py", line 489, in parse_records
record = self.parse(handle, do_features)
File "Scanner.py", line 473, in parse
if self.feed(handle, consumer, do_features):
File "Scanner.py", line 445, in feed
self._feed_feature_table(consumer, self.parse_features(skip=False))
File "Scanner.py", line 171, in parse_features
raise ValueError("Premature end of features table, marker '//' found")
//