biolink-model
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Incorporate bioregistry.io prefix mappings to biolink-model prefix hierarchy.
https://github.com/bioregistry/bioregistry/blob/main/docs/_data/bioregistry.jsonld could be incorporated into our prefix ingest.
@cmungall - do you think this is a good direction?
This is the JSON-LD version of the RDF dump of the Bioregistry. If you just want the prefix map, you can grab one of these:
- Only canonical prefixes: https://github.com/biopragmatics/bioregistry/blob/main/docs/_data/contexts/obo.context.jsonld
- Canonical + synonyms of prefixes: https://github.com/biopragmatics/bioregistry/blob/main/docs/_data/contexts/obo_synonyms.context.jsonld
Alternatively, the Bioregistry allows you to curate a collection that will result in a custom prefix map getting generated in this folder. If you want to do that, you can add something to this file https://github.com/biopragmatics/bioregistry/blob/main/src/bioregistry/data/collections.json or send an issue with the "add a new collection" template from here https://github.com/biopragmatics/bioregistry/issues/new/choose