biolink-model
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biolink
Schema and generated objects for biolink data model and upper ontology
- HP, ZP, MP, PATO - UBERON, BFO, CARO - FBBT, FMA, MA, WBBT, ZFA, - FAO, HSAPDV, MPATH. NBO, NCBITaxon, OBA - STATO
👍 - deprecate, accept this PR 👎 - keep original knowledge source and primary knowledge source, reject this PR
**Describe the bug** This page is not populated: https://biolink.github.io/biolink-model/docs/named_things.html
I want to add predicates to the model. 'target': a subject (drug/small molecule) "target" an object (protein/gene) 'target by': a subject (protein/gene) is "targeted by" an object (drug/small molecule) Example...
Entity sets
We want to represent sets of entities (e.g. gene sets) in the Biolink Model. This is motivated by https://github.com/NCATS-Tangerine/NCATS-ReasonerStdAPI/issues/57. This may be related to #348. We have two ideas for...
https://lhncbc.nlm.nih.gov/ii/tools/SemRep_SemMedDB_SKR/SemRep.html request from @realmarcin
Using SnpEff to predict sequence variant to gene relationships produces predicate terms from the Sequence Ontology (SO). Currently biolink mappings for Sequence Ontology terms are incomplete. https://pcingola.github.io/SnpEff/se_inputoutput/ Additionally, SnpEff returns...
On Translator Relay call, SPOKE mention difficulties in mapping some types, e.g food, cell types. In fact we have cell types: https://biolink.github.io/biolink-model/docs/Cell Copied from Zoom chat: > it is the...
@Sierra Moxon (SRI) (or anyone else with knowledge on the topic) quick question... i have a few data elements in need of a better attribute type. i have been using...