orange3-single-cell
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biolab
🍊🔬 Orange add-on for gene expression of single cell data
Write documentation for the following widgets: - Filter - Single Cell Preprocess
Write documentation for - Load Data - Single Cell Datasets
Add marker genes from [CD Marker Handbook](https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf). For now, include only those with positive relation between expression and cell type.
Include cluster analysis, differential expression, and Go ontology
It would help if Cluster Analysis would arrange genes in the order of selected clusters and differential expression scores. That is, if say select say first three clusters, the order...
Perhaps applies to differential gene expression in general; If we want to find cluster specific genes, we have to compare the expression in cluster A to its most similar cluster....
This issue is related to PR https://github.com/biolab/orange3/pull/3047, which enables saving and loading of compressed pickle files. Once this is merged into Orange and released, I propose to: - move all...
##### Single Cell version ##### Orange version ##### Expected behavior Many cell types already have defined markers for their lineage and type. Tissue samples are complex mixtures of cells. Suppose...
##### Single Cell version ##### Orange version ##### Expected behavior I would like to be able to color the points on the t-SNE plot by gene expression. This would allow...