orange3-single-cell
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biolab
🍊🔬 Orange add-on for gene expression of single cell data
The implementation of CCA for more than 2 data sets can be sped up by using matrix operations more efficiently.
An alternative to `log(CPM+1)` transformation of count data is the TF-IDF transform, adopted from text analysis. Similar to finding characteristic words describing a topic in the document, TF-IDF can be...
**Describe the bug** crashing as the title has described **Additional context** A few seconds after the app crashed, the Mac OS issue report window appears, in which with the following...
Also, and this may not belong in this PR, but would be an improvement, maybe coloring the dots according to their mean expression would make sense. Something like what [scanpy](https://scanpy.readthedocs.io/en/stable/api/scanpy.pl.dotplot.html#scanpy.pl.dotplot)...
One issue with Orange and any kind of interactive data analysis is that during data exploration one will likely generate many kinds of analyses and this requires many widgets to...
##### Single Cell version commit 9edc5a08a7d29c5fc878b311dc309b757e03b41b (origin/master, origin/HEAD, master) ##### Expected behavior Load Data should remember paths in a schema-specific way, similar to File widget. ##### Actual behavior Load Data...
Dot matrix should handle data that includes negative values. Shift gene expression (columns) to 0 (add -min(col)).
Write documentation for the following widgets: - Batch Effect Removal - Single Cell Preprocess
Write documentation for the following widgets: - Marker Genes - Score Cells