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Support for gVCF

Open lijiayong opened this issue 8 years ago • 0 comments

Does vgraph compare gVCFs of various forms? Aside from the standard form on page 24 of gVCF spec where a symbolic alt allele <*> indicates a hom ref block, GATK uses a different symbolic alt allele < NON_REF >. Some gVCFs mark no call blocks rather than hom ref blocks, and some mark both. Does vgraph accept all these forms of gVCFs? Thanks a lot.

lijiayong avatar Apr 29 '16 20:04 lijiayong