ERROR in Indexing Task

[Kesling515]

I am trying to use c-store service, and I used dcm4che toolkit to run command "dcmsnd [email protected]:6666 C:\XXX. The dicom files store in my specified directory successfully, but Index fail. And this error in the console:

ERROR lucene.LuceneIndexer$2 (LuceneIndexer.java:224) - ERROR in Indexing Task java.lang.IllegalArgumentException: Directory MMapDirectory@D:\XXX\dicoogle\index\indexed lockFactory=org.apache.lucene.store.NativeFSLockFactory@4bc4f6b1 still has pending deleted files; cannot initialize IndexWriter at org.apache.lucene.index.IndexWriter.(IndexWriter.java:789) ~[lucene-3.0.1.jar:?] at dicoogle.lucene.LuceneIndexer.beginTransaction(LuceneIndexer.java:253) ~[lucene-3.0.1.jar:?] at dicoogle.lucene.LuceneIndexer.access$100(LuceneIndexer.java:71) ~[lucene-3.0.1.jar:?] at dicoogle.lucene.LuceneIndexer$2.call(LuceneIndexer.java:203) [lucene-3.0.1.jar:?] at dicoogle.lucene.LuceneIndexer$2.call(LuceneIndexer.java:189) [lucene-3.0.1.jar:?] at java.util.concurrent.FutureTask.run$$$capture(FutureTask.java:266) [?:1.8.0_291] at java.util.concurrent.FutureTask.run(FutureTask.java) [?:1.8.0_291] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [?:1.8.0_291] at java.util.concurrent.FutureTask.run$$$capture(FutureTask.java:266) [?:1.8.0_291] at java.util.concurrent.FutureTask.run(FutureTask.java) [?:1.8.0_291] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [?:1.8.0_291] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [?:1.8.0_291] at java.lang.Thread.run(Thread.java:748) [?:1.8.0_291] INFO lucene.LuceneIndexer$2 (LuceneIndexer.java:229) - Finished Index Task: 1589912486,IndexReport [nIndexedFiles=0, nErrors=1, elapsedTime=8]

[Peng-Da]

I met same problem.Have you resolved it ?

[Enet4]

This is not a problem with the core Dicoogle project, but with the open Lucene-based plugin, which is not hosted in this repository.

With that said, @Peng-Da If you can provide more details about this issue and a list of steps to reproduce it, this may help the Dicoogle team fix it in future versions.

[Peng-Da]

@Enet4 I use dicoogle 3.0.6 and dicoogle plugins(lucene and filestorage) . Got error logs below:

2022-05-06 18:01:07 | DEBUG [pool-32-thread-1] (FileStoragePlugin.java:149) - Trying to store file to FS path C:\Users\Admini\AppData\Local\Temp\RuiPengPetHospital\US\2022\05\06\doghuniu\1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm 2022-05-06 18:01:07 | DEBUG [pool-32-thread-1] (FileStoragePlugin.java:159) - Assigning new file to URI file:///C:/Users/Admini/AppData/Local/Temp/RuiPengPetHospital/US/2022/05/06/doghuniu/1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm 2022-05-06 18:01:07 | INFO [Thread-6] (PluginController.java:661) - Starting Indexing procedure for file:///C:/Users/Admini/AppData/Local/Temp/RuiPengPetHospital/US/2022/05/06/doghuniu/1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm 2022-05-06 18:01:07 | DEBUG [Thread-6] (PluginController.java:416) - Retrieved storage for scheme: file:///C:/Users/Admini/AppData/Local/Temp/RuiPengPetHospital/US/2022/05/06/doghuniu/1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm 2022-05-06 18:01:07 | DEBUG [Thread-6] (FileStoragePlugin.java:241) - FileStorage.at("file:///C:/Users/Admini/AppData/Local/Temp/RuiPengPetHospital/US/2022/05/06/doghuniu/1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm") 2022-05-06 18:01:07 | INFO [Thread-6] (PluginController.java:694) - Finished firing all indexing plugins for file:///C:/Users/Admini/AppData/Local/Temp/RuiPengPetHospital/US/2022/05/06/doghuniu/1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm 2022-05-06 18:01:07 | DEBUG [pool-2-thread-4] (LuceneIndexer.java:195) - Started Index Task: 662927524 2022-05-06 18:01:07 | ERROR [pool-2-thread-4] (LuceneIndexer.java:224) - ERROR in Indexing Task java.lang.IllegalArgumentException: Directory MMapDirectory@E:\projects\pacs-client\index\indexed lockFactory=org.apache.lucene.store.NativeFSLockFactory@79494cd4 still has pending deleted files; cannot initialize IndexWriter at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:789) ~[lucene-3.0.0.jar:?] at dicoogle.lucene.LuceneIndexer.beginTransaction(LuceneIndexer.java:253) ~[lucene-3.0.0.jar:?] at dicoogle.lucene.LuceneIndexer.access$100(LuceneIndexer.java:71) ~[lucene-3.0.0.jar:?] at dicoogle.lucene.LuceneIndexer$2.call(LuceneIndexer.java:203) [lucene-3.0.0.jar:?] at dicoogle.lucene.LuceneIndexer$2.call(LuceneIndexer.java:189) [lucene-3.0.0.jar:?] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [?:1.8.0_322] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [?:1.8.0_322] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [?:1.8.0_322] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [?:1.8.0_322] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [?:1.8.0_322] at java.lang.Thread.run(Thread.java:750) [?:1.8.0_322] 2022-05-06 18:01:07 | INFO [pool-2-thread-4] (LuceneIndexer.java:229) - Finished Index Task: 662927524,IndexReport [nIndexedFiles=0, nErrors=1, elapsedTime=5] 2022-05-06 18:01:07 | INFO [pool-2-thread-4] (PluginController.java:683) - Task [c5b1aa46-6d06-42b0-a3a3-6362d3c41ce5] complete: file:///C:/Users/Admini/AppData/Local/Temp/RuiPengPetHospital/US/2022/05/06/doghuniu/1.2.840.113619.2.400.385732288.1651859801.18.1.64.dcm is indexed

It happened sometimes,not always. thanks

[Enet4]

@Peng-Da The stack trace appears to suggest that an older version of the Lucene plugin itself is in use. Can you try again using the latest combination of Dicoogle and its filestorage + lucene plugins (3.0.7)?

In addition, can you check whether adding the option -Ddicoogle.index.async=false helps to mitigate the problem?

[logicorptech]

Hi ..@Enet4 i have got same issue, can you help to resolve it, i didn't find -Ddicoogle.index.async=false option in settings