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Published 20 hours ago • verified publisher icon bioinformatics-centre

Inconsistency in -u argument

Open bernt-matthias opened this issue 7 months ago • 1 comments

When creating the Galaxy wrappers for kaiju I noticed that the parameter -u seems to be inconsistent between kaiju2table and kaiju2krona:

  • -u Unclassified reads are not counted for the total reads when calculating percentages for classified reads.
  • -u Include count for unclassified reads in output.

Is it just the docs or are they relly working opposite?

bernt-matthias avatar Apr 11 '25 08:04 bernt-matthias