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Published 20 hours ago • verified publisher icon bioinformatics-centre

Issue with extracting taxdump

Open Mayurk619 opened this issue 1 year ago • 1 comments

I cannot seem to figure out if this is an issue or not. I'm using kaiju-makedb in cluster. It required taxdump that is why I added that file in the directory. I also did md5sum for the file but it didn't match with server record. I downloaded the file multiple times manually but wasn't fixed. Is there a way to do it without this? Kaiju error

This is my job submission script and the command that I used. kaiju job submit

Mayurk619 avatar Jul 04 '23 18:07 Mayurk619

How about running kaiju-makedb without the --no-download option? Generally, it downloads all necessary files automatically.

pmenzel avatar Jul 04 '23 19:07 pmenzel