kaiju-mkbwt step is always killed

[DooYal]

output log file: [root@localhost kaiju]# kaiju-mkbwt -n 16 -a ACDEFGHIKLMNPQRSTVWY -o refseq/refseq refseq/kaiju_db_refseq.faa

infilename= refseq/kaiju_db_refseq.faa

outfilename= refseq/refseq

Alphabet= ACDEFGHIKLMNPQRSTVWY

nThreads= 16

length= 0.000000

checkpoint= 5

caseSens=OFF

revComp=OFF

term= *

revsort=OFF

help=OFF

Sequences read time = 201.124172s SLEN 30481074588 NSEQ 93556395 ALPH *ACDEFGHIKLMNPQRSTVWY Killed

[pmenzel]

probably need more RAM, check the README for the required amount of RAM for the different databases

[DooYal]

probably need more RAM, check the README for the required amount of RAM for the different databases Thanks for the advice. I have read about the README file, which lists that the refseq-db building requires 68G RAM, so maybe I have to find a better server as the RAM in my current server is significantly <68G ... /(ㄒoㄒ)\

[root@localhost ~]# free -m total used free shared buff/cache available Mem: 31959 988 241 6 30729 30510 Swap: 16143 3360 12783