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[ERROR] Failed to execute goal org.codehaus.mojo:versions-maven-plugin:2.7:set (default-cli): Goal requires a project to execute but there is no POM in this directory

Open zhangyafeng1 opened this issue 4 years ago • 5 comments

hello, when i run ./build.sh , it gives me this problem,could you tell me how to solve this problem? hope your answer

[ERROR] Failed to execute goal org.codehaus.mojo:versions-maven-plugin:2.7:set (default-cli): Goal requires a project to execute but there is no POM in this directory (/ifs/TJPROJ3/HWEU/USER/heyi/varsim_new). Please verify you invoked Maven from the correct directory. -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MissingProjectException

zhangyafeng1 avatar Oct 23 '19 04:10 zhangyafeng1

Hi @zhangyafeng1 were you using master branch of varsim?

yunfeiguo avatar Oct 23 '19 04:10 yunfeiguo

sorry I am a greenhand of bioinformatics . what is maste branch? I can not fand it in mt path. this is the list of my path

varsim_somatic.py liftover_restricted_vcf_map.py init.py generate_small_test_ref.py varsim_validator.py varsim.py varsim_multi.py utils.py compare_vcf.py quickstart.sh VarSim.jar RTG.jar varsim-0.8.4.tar.gz build.sh opt

zhangyafeng1 avatar Oct 23 '19 05:10 zhangyafeng1

I download that software on this website.The name of that software is varsim-master. when I run build.sh again, I got another error . [ERROR] Failed to execute goal on project varsim: Could not resolve dependencies for project com.bina.varsim:varsim:jar:0.8.4: Could not transfer artifact org.hamcrest:hamcrest-core:jar:1.3 from/to central (https://repo.maven.apache.org/maven2): Connect to repo.maven.apache.org:443 [repo.maven.apache.org/151.101.24.215] failed: Connection timed out (Connection timed out) -> [Help 1] [ERROR] Could you give me some suggestion about how to use the varsim to simulate some somatic samples? Thanks very much

zhangyafeng1 avatar Oct 23 '19 12:10 zhangyafeng1

Hi @zhangyafeng1 could you try this http://bioinform.github.io/varsim/#download_varsim ?Thanks.

yunfeiguo avatar Oct 23 '19 18:10 yunfeiguo

I download the software from the website you give me,but it still does not work when I run the build.sh. It gives me those information:Failed to execute goal on project varsim: Could not resolve dependencies for project com.bina.varsim:varsim:jar:0.8.5: Could not transfer artifact org.hamcrest:hamcrest-core:jar:1.3 from/to central (https://repo.maven.apache.org/maven2): repo.maven.apache.org: Name or service not known: Unknown host repo.maven.apache.org: Name or service not known -> [Help 1]

zhangyafeng1 avatar Oct 24 '19 03:10 zhangyafeng1