core-bioimage-io-python
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Python libraries for loading, running and packaging bioimage.io models
Hi! I'm trying to test a model that pass the validation test but I get the following message, both with test-model and predict-image: ``` (bio-core-dev) esti@estimacbookair BioImageIO % bioimageio validate...
Hi all, I would like to apply a bioimage-io model to an image using Python. Unfortnunately, I cannot find the documentation that shows how to do this. Furthermore, the chatbot...
This PR - updates the CLI (rewrite that now include a predict command) - includes some other changes to allow loading statistical measures from json with pydantic validation
I have attempted to resolve the #383. Initially I did minor fixes to the weight convresions while adding tests. Each weight conversion method returns the corresponding `WeightDescr` (https://github.com/bioimage-io/core-bioimage-io-python/pull/411/commits/fbbfc573e2cd2449a9372c4b5bfe131a2dfc8ee1). Then, to...
```console $ bioimageio test impartial-shrimp ✔️ bioimageio validation passed ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ source https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/impartial-shrimp/1.1/files/rdf.yaml format version model 0.5.3 bioimageio.spec 0.5.3.2 bioimageio.core 0.6.9 ❓ location detail ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ ✔️ initialized ModelDescr to describe model...
converting the input to the model to float to avoid numpy array errors from torch @oeway
Hi everyone, I wanted to try one of the available models to enhance membranes in one of my images. The image is 3D with `shape = (91, 1024, 1024)`. I...
I read the code and it seems to be a design choice. I think this behaviour should change and it should test all weight formats by default, because I was...