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About SCFAs.

Open orange-3711 opened this issue 1 year ago • 1 comments

Hi @mortonjt

What format should I enter if I want to analyze SCFAs data in qiime? I tried to convert the form to biom and then to qza and encountered the following error

image image

orange-3711 avatar Dec 29 '23 02:12 orange-3711

Hi, this looks like a biom format error. It may help to produce a minimal example and reproduce the error that to_dataframe throws (and post on the biom_format issue tracker)

On Thu, Dec 28, 2023 at 10:00 PM orange-3711 @.***> wrote:

Hi @mortonjt https://github.com/mortonjt

What format should I enter if I want to analyze SCFAs data in qiime? I tried to convert the form to biom and then to qza and encountered the following error image.png (view on web) https://github.com/biocore/songbird/assets/117793353/d8377ec1-866d-4945-8af1-b39dc2f42856 image.png (view on web) https://github.com/biocore/songbird/assets/117793353/d5b82400-8bd5-4adb-9604-515138343a4e

— Reply to this email directly, view it on GitHub https://github.com/biocore/songbird/issues/170, or unsubscribe https://github.com/notifications/unsubscribe-auth/AA75VXPZIYXGWOZI36AIGADYLYW27AVCNFSM6AAAAABBGEONYKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGA2TSMBRG43TCNY . You are receiving this because you were mentioned.Message ID: @.***>

mortonjt avatar Dec 29 '23 12:12 mortonjt