mmvec
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biocore
Neural networks for microbe-metabolite interaction analysis
Hello. I am setting up mmvec in a new conda environment using the installation instructions provided on the mmvec GitHub page. However I've run into a problem where mmvec is...
Hello author, thank you very much for sharing this model, but I have a problem during the learning process. I would like to ask you: Can the QIIME2-2023.9 version run...
Hello, I'm very interested in using your program on my dataset, but I'm having issues getting started. I've tried both the non-qiime2 and qiime2 methods of using the program, but...
Hello, I used your tool mmvec to analyze the co occurrence probability of microorganisms and metabolites. I use the default parameters of the qiime2 command. I have run it many...
There is an error showcasing issues plotting the conditional probability heatmap See below fore more details https://forum.qiime2.org/t/plugin-error-from-mmvec-index-0-is-out-of-bounds-for-axis-0-with-size-0/23297
We're going to go [pytorch](https://www.pytorchlightning.ai/) OR [numpyro](https://github.com/pyro-ppl/numpyro). The framework will have the following skeleton `model.py (mmvec.py)` ```python import torch import torch.nn from torch.distributions import Multinomial class MMvec(nn.Module): def __init__(self, num_microbes,...
I've been getting a lot of feedback from users on how long MMvec takes to run. I'll integrate these comments into the README eventually. Below are some tips on how...
Skbio is currently updating pandas, so we will need to update this conda recipe as well.
There are edge cases where tensorboard will only show a single dot  This means that MMvec only ran a single step. There are a couple of known things that...