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pygtftk: add linux-aarch64 build
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The Linux ARM64 build fails with the same reason as:
- https://github.com/bioconda/bioconda-recipes/pull/46177
Package(s) built are ready for inspection:
| Arch | Package | Zip File / Repodata | CI | Instructions |
|---|---|---|---|---|
| linux-64 | pygtftk-1.6.2-py39h4e691d4_2.tar.bz2 | LinuxArtifacts.zip | Azure | showYou may also useconda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name> |
| osx-64 | pygtftk-1.6.2-py39hd999155_2.tar.bz2 | OSXArtifacts.zip | Azure | showYou may also useconda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name> |
| linux-aarch64 | pygtftk-1.6.2-py39h73eeb99_2.tar.bz2 | repodata.json | CircleCI | showYou may also useconda to install:conda install -c https://output.circle-artifacts.com/output/job/ef88d15e-8e9d-499f-ac9a-0aeb3a45b121/artifacts/0/tmp/artifacts/packages <package name> |
Docker image(s) built:
| Package | Tag | CI | Install with docker |
|---|---|---|---|
| pygtftk | 1.6.2--py39h4e691d4_2 | Azure | showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/pygtftk:1.6.2--py39h4e691d4_2.tar.gz | docker load |
mgrigorov in 🌐 euler-arm-22 in /tmp/pygtftk via 🅒 test123 took 16s
❯ tar xvf pygtftk-1.6.2-py39h73eeb99_2.tar.bz2 (test123)
info/run_exports.json
info/test/run_test.py
info/hash_input.json
info/has_prefix
info/recipe/run_test.sh
info/test/run_test.sh
info/index.json
info/recipe/meta.yaml.template
info/recipe/meta.yaml
info/recipe/conda_build_config.yaml
info/about.json
info/files
info/git
info/paths.json
lib/python3.9/site-packages/pygtftk/data/hg38_chr1/hg38_chr1.genome
lib/python3.9/site-packages/pygtftk/data/mini_real_ens/hg38_ens.genome
lib/python3.9/site-packages/pygtftk/data/mini_real_noov_rnd_tx/hg38.genome
lib/python3.9/site-packages/pygtftk/data/tiny_real/hg38.genome
lib/python3.9/site-packages/pygtftk/data/mini_real/hg38.genome
lib/python3.9/site-packages/pygtftk/data/simple/simple.join_mat_2
lib/python3.9/site-packages/pygtftk/stats/intersect/read_bed/exclude.hpp
lib/python3.9/site-packages/pygtftk/src/libgtftk/README.md
lib/python3.9/site-packages/pygtftk/data/simple/add_attr_to_pos.tab
lib/python3.9/site-packages/pygtftk/data/tiny_real/mini_real_coding_pot.tab
lib/python3.9/site-packages/pygtftk/data/mini_real/mini_real_coding_pot.tab
lib/python3.9/site-packages/pygtftk-1.6.2.dist-info/direct_url.json
lib/python3.9/site-packages/pygtftk/stats/intersect/create_shuffles.pyx
lib/python3.9/site-packages/pygtftk/stats/intersect/read_bed/read_bed_as_list.pyx
lib/python3.9/site-packages/pygtftk/stats/multiprocessing/multiproc.pyx
lib/python3.9/site-packages/pygtftk/stats/intersect/overlap/overlap_regions.pyx
lib/python3.9/site-packages/pygtftk/data/simple_02/simple_02.reads.fq
lib/python3.9/site-packages/pygtftk/data/simple/simple_reads.fq
lib/python3.9/site-packages/pygtftk/data/simple/simple.3.bt2
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lib/python3.9/site-packages/pygtftk/data/simple_02/simple_02.geneList
lib/python3.9/site-packages/pygtftk/data/simple/simple_peaks.bed3
lib/python3.9/site-packages/pygtftk/data/ologram_2/multiple_overlap_trivial_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/hg38_chr1/H3K79me2_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/ologram_1/H3K4me3_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/ologram_1/H3K36me3_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/ologram_1/H3K79me2_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/hg38_chr1/H3K36me3_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/hg38_chr1/H3K4me3_ologram_stats.tsv
lib/python3.9/site-packages/pygtftk/data/hg38_chr1/hg38_chr1_counts_ENCFF630HEX.tsv
lib/python3.9/site-packages/pygtftk/data/tiny_real/mini_real_counts_ENCFF630HEX.tsv
lib/python3.9/site-packages/pygtftk/data/mini_real/mini_real_counts_ENCFF630HEX.tsv
lib/python3.9/site-packages/pygtftk/lib/libgtftk.cpython-39-aarch64-linux-gnu.so
lib/python3.9/site-packages/pygtftk/stats/intersect/create_shuffles.cpython-39-aarch64-linux-gnu.so
lib/python3.9/site-packages/pygtftk/stats/intersect/read_bed/read_bed_as_list.cpython-39-aarch64-linux-gnu.so
lib/python3.9/site-packages/pygtftk/stats/multiprocessing/multiproc.cpython-39-aarch64-linux-gnu.so
lib/python3.9/site-packages/pygtftk/stats/intersect/overlap/overlap_regions.cpython-39-aarch64-linux-gnu.so
lib/python3.9/site-packages/pygtftk/src/libgtftk/version.h
lib/python3.9/site-packages/pygtftk/src/libgtftk/config.h
lib/python3.9/site-packages/pygtftk/src/libgtftk/libgtftk.h
lib/python3.9/site-packages/pygtftk/data/simple/simple_col.csv
lib/python3.9/site-packages/pygtftk/data/simple_02/simple_02.bw
lib/python3.9/site-packages/pygtftk/data/simple/simple.2.bw
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lib/python3.9/site-packages/pygtftk/data/simple/simple.3.bw
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lib/python3.9/site-packages/docs/source/example_treeify.pdf
lib/python3.9/site-packages/docs/source/merge_ologram_stats_01.pdf
lib/python3.9/site-packages/docs/source/treeified.pdf
lib/python3.9/site-packages/docs/source/example_pa_02.pdf
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lib/python3.9/site-packages/docs/source/example_ologram_modl.pdf
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lib/python3.9/site-packages/docs/source/bla.pdf
lib/python3.9/site-packages/docs/source/example_07.pdf
lib/python3.9/site-packages/docs/source/bwig_coverage.rst
lib/python3.9/site-packages/docs/source/installation.rst
lib/python3.9/site-packages/docs/source/sequence.rst
lib/python3.9/site-packages/docs/source/miscellaneous.rst
lib/python3.9/site-packages/docs/source/index.rst
lib/python3.9/site-packages/docs/source/api.rst
lib/python3.9/site-packages/docs/source/gtftk_args.rst
lib/python3.9/site-packages/docs/source/about.rst
lib/python3.9/site-packages/docs/source/conversion.rst
lib/python3.9/site-packages/docs/source/coordinates.rst
lib/python3.9/site-packages/docs/source/editing.rst
lib/python3.9/site-packages/docs/source/annotation.rst
lib/python3.9/site-packages/docs/source/developers.rst
lib/python3.9/site-packages/docs/source/coverage.rst
lib/python3.9/site-packages/docs/source/information.rst
lib/python3.9/site-packages/docs/source/selection.rst
lib/python3.9/site-packages/docs/source/ologram.rst
lib/python3.9/site-packages/pygtftk/data/simple_02/simple_02.gtf
lib/python3.9/site-packages/pygtftk/data/simple_07/simple_07.gtf
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lib/python3.9/site-packages/pygtftk/data/simple_05/simple_rm.gtf
lib/python3.9/site-packages/pygtftk/data/simple_03/simple_short_long.gtf
lib/python3.9/site-packages/pygtftk/data/simple_06/simple_06.gtf
lib/python3.9/site-packages/pygtftk/data/mini_real_10M/ids_minus.gtf
lib/python3.9/site-packages/pygtftk/data/mini_real_10M/ids_plus.gtf
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lib/python3.9/site-packages/pygtftk/stats/multiprocessing/__init__.py
lib/python3.9/site-packages/pygtftk/stats/__init__.py
lib/python3.9/site-packages/pygtftk/stats/intersect/modl/__init__.py
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lib/python3.9/site-packages/pygtftk/plugins/get_attr_list.py
lib/python3.9/site-packages/pygtftk/plugins/select_by_tx_size.py
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lib/python3.9/site-packages/pygtftk/plugins/short_long.py
lib/python3.9/site-packages/pygtftk/plugins/tss_dist.py
lib/python3.9/site-packages/pygtftk/plugins/merge_attr.py
lib/python3.9/site-packages/pygtftk/plugins/rm_dup_tss.py
lib/python3.9/site-packages/pygtftk/plugins/splicing_site.py
lib/python3.9/site-packages/pygtftk/plugins/ologram_modl_treeify.py
lib/python3.9/site-packages/pygtftk/plugins/random_tx.py
lib/python3.9/site-packages/pygtftk/plugins/convert_ensembl.py
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lib/python3.9/site-packages/pygtftk/plugins/col_from_tab.py
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lib/python3.9/site-packages/pygtftk/plugins/join_attr.py
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lib/python3.9/site-packages/pygtftk/stats/beta.py
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lib/python3.9/site-packages/pygtftk/bwig/__init__.py
lib/python3.9/site-packages/pygtftk/plugins/__init__.py
lib/python3.9/site-packages/pygtftk/data/simple_04/__init__.py
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lib/python3.9/site-packages/docs/Makefile
lib/python3.9/site-packages/pygtftk/data/simple_02/simple_02_nbe.gtf.old
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mgrigorov in 🌐 euler-arm-22 in /tmp/pygtftk via 🅒 test123
❯ file bin/* (test123)
bin/gtftk: a /opt/conda/conda-bld/pygtftk_1714545167509/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho script, ASCII text executable
mgrigorov in 🌐 euler-arm-22 in /tmp/pygtftk via 🅒 test123
❯ conda install ./pygtftk-1.6.2-py39h73eeb99_2.tar.bz2 (test123)
Downloading and Extracting Packages:
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
mgrigorov in 🌐 euler-arm-22 in /tmp/pygtftk via 🅒 test123 took 29s
❯ gtftk (test123)
Traceback (most recent call last):
File "/home/mgrigorov/miniconda3/envs/test123/bin/gtftk", line 25, in <module>
import pygtftk
ModuleNotFoundError: No module named 'pygtftk'
It is weird that it cannot find its own module ...
@martin-g "It is weird that it cannot find its own module ..."
If you think its ok, please feel free to merge
If you think its ok, please feel free to merge
I don't have permissions to merge PRs
Should have an email, this would at least allow you to merge these already approved PR's
Thank you so much of helping with the ARM rollout!
Thank you, @rpetit3 ! It is my pleasure! And it is a lot of fun!
I will leave this PR open for a while so others can take a look if they have time and interest in it.