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prophyle: add linux-aarch64 build

Open martin-g opened this issue 2 months ago • 1 comments

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martin-g avatar Apr 22 '24 06:04 martin-g

The Linux ARM64 build fails with the same problem as:

  • https://github.com/bioconda/bioconda-recipes/pull/46177

martin-g avatar Apr 22 '24 07:04 martin-g

@BiocondaBot please fetch artifacts

martin-g avatar Apr 30 '24 19:04 martin-g

Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 prophyle-0.3.3.2-py310h6cc9453_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 prophyle-0.3.3.2-py38h5cf8b27_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 prophyle-0.3.3.2-py39h4e691d4_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64 prophyle-0.3.3.2-py310h4b49385_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 prophyle-0.3.3.2-py38hf7fe521_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 prophyle-0.3.3.2-py39hd999155_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
linux-aarch64 prophyle-0.3.3.2-py310heba8b3b_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/f8f34f8b-d875-4ffa-812b-37901cb684ec/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 prophyle-0.3.3.2-py38h4b64ade_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/f8f34f8b-d875-4ffa-812b-37901cb684ec/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 prophyle-0.3.3.2-py39h73eeb99_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/f8f34f8b-d875-4ffa-812b-37901cb684ec/artifacts/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag CI Install with docker
prophyle 0.3.3.2--py310h6cc9453_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/prophyle:0.3.3.2--py310h6cc9453_1.tar.gz | docker load
prophyle 0.3.3.2--py38h5cf8b27_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/prophyle:0.3.3.2--py38h5cf8b27_1.tar.gz | docker load
prophyle 0.3.3.2--py39h4e691d4_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/prophyle:0.3.3.2--py39h4e691d4_1.tar.gz | docker load

BiocondaBot avatar Apr 30 '24 19:04 BiocondaBot

After installing ete3==3.1.3 (with pyqt 5.x) all looks good:

mgrigorov in 🌐 euler-arm-22 in /tmp/prophyle via 🅒 test123 took 39s 
❯ prophyle                                                                                                                                                                                                 (test123) 

Program: prophyle (phylogeny-based metagenomic classification)
Version: 0.3.3.2
Authors: Karel Brinda, Kamil Salikhov, Simone Pignotti, Gregory Kucherov
Contact: [email protected]

Usage:   prophyle <command> [options]
options:
Command:
  
    download     download a genomic database
    index        build index
    classify     classify reads
    analyze      analyze results (experimental)
    footprint    estimate memory footprint

    compress     compress a ProPhyle index
    decompress   decompress a compressed ProPhyle index
    compile      compile auxiliary ProPhyle programs

LGTM!

martin-g avatar May 01 '24 06:05 martin-g

@BiocondaBot please add label

martin-g avatar May 01 '24 06:05 martin-g