Update comet-ms version in openms-thirdparty

[jonasscheid]

Follow-up of #46567

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[jonasscheid]

@jpfeuffer @timosachsenberg Have you ever seen this before? Do we hit a space limit now? That's new. Build should not be bigger than the previous one 🤔

.15:17:08 BIOCONDA INFO (ERR) [Mar 22 15:17:08] SERR [Mar 22 15:17:08] ERRO Task processing failed: API error (500): {"message":"write /usr/local/share/sirius-ms-5.8.2-0/app/sirius_rest_service-5.8.2-boot.jar: no space left on device"}

[jpfeuffer]

Yes. I pray for the day they throw out mulled container testing.

[jonasscheid]

How do we move forward?

[jpfeuffer]

I honestly don't know. We never had this problem and our own package size rather decreased than increased. Dependencies must have increased in size or the basic container itself uses more space now.

[jonasscheid]

@bioconda/core Is there any workaround here?

[BiocondaBot]

Reposting for @jonasscheid to enable pings (courtesy of the BiocondaBot):

@bioconda/core Is there any workaround here?

[timosachsenberg]

@bgruening any idea?

[jpfeuffer]

Since bioconda has a hard limit on package size due to its container tests, the only two solutions that I see:

• move to conda-forge
• reduce the size (e.g. by removing Sirius)

[timosachsenberg]

I would say we can remove Sirius.

[jpfeuffer]

It's quite suboptimal since the same minor version will have different thirdparty tools but we have no choice if bioconda can't even handle around 1GB of packages that don't even have to be tested since openms-thirdparty is just an agglomeration of packages basically. And from my experience, I don't think anything will change soon.

[jonasscheid]

So we go for removing Sirius?

[bgruening]

conda-forge and also bioconda splits big packages into subpackages, different recipes if its needed.

[jpfeuffer]

The openms-thirdparty recipe has 0 bytes though. It just wraps versions of dependencies that should be tested to work together.

[jonasscheid]

After removing Sirius it looks like there is some sort of hick-up when building 🤔

[jpfeuffer]

Try to push some comment somewhere to see if the problem goes away.

[jonasscheid]

Seems a persistent error. @jpfeuffer @timosachsenberg Do you think we can outsource this bundle to multi-package-containers ?

[jpfeuffer]

Sure, but a) the current error seems to be during the build of the regular openms package (probably stalling because out of RAM or something) b) multi-package container will not give you a conda package if you need that, too

[bgruening]

Work is still ongoing to remove mamba, support the new smaller package formats etc ... so I try restarting this build here. What strikes me is that this does not to be a space issue anymore? Is this hitting now some other limitation (memory, runtime)?

[poshul]

Not sure what's going on with the CI since the logs have timed out @bgruening can you try to trigger the tests again?

[timosachsenberg]

##[error]No hosted parallelism has been purchased or granted. To request a free parallelism grant, please fill out the following form https://aka.ms/azpipelines-parallelism-request

@bgruening I guess this is a bioconda issue? when will this be resolved