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Update antiSMASH to 7.1.0

Open kblin opened this issue 1 year ago • 1 comments

Update antiSMASH to version 7.1.0

  • Bump minimal Python version to 3.9
  • Replace muscle dependency by brawn
  • Bump to latest version of helperlibs
  • Replace Java dependency by nrpys
  • Replace pyscss dependency by libsass
  • Bump minimal version of scikit-learn
  • Drop version pin for DIAMOND
  • Add moods dependency to get access to MOODS-python
  • Relax hmmer3 version requirements
  • Pin meme to exactly 4.11.2

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kblin avatar Nov 21 '23 08:11 kblin

ok, clearly the bioconda nrpys package is broken:

❯ mamba install nrpys && (pip freeze | grep nrpys || echo "missing nrpys")

Looking for: ['nrpys']

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache
bioconda/linux-64                                           Using cache
bioconda/noarch                                             Using cache
pkgs/r/noarch                                                 No change
pkgs/main/noarch                                              No change
pkgs/r/linux-64                                               No change
pkgs/main/linux-64                                            No change

Pinned packages:
  - python 3.9.*


Transaction

  Prefix: /home/kai/mambaforge/envs/asbuild

  All requested packages already installed

missing nrpys

I'll raise an issue with that package.

kblin avatar Nov 21 '23 10:11 kblin