Update bcftools to 1.16

[BiocondaBot]

Update bcftools: 1.15.1 → 1.16

Info	Link or Description
Recipe	recipes/bcftools (click to view/edit other files)
Summary	BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
Home	https://github.com/samtools/bcftools
Releases	https://github.com/samtools/bcftools/releases
Author	@samtools

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This pull request was automatically generated (see docs).

[jmarshall]

This will need to wait for a bioconda-utils update that pins htslib at 1.16.

[nh13]

@jmarshall pinnings look like they've happened in #797. Can this and #36525 be merged?

[jmarshall]

As we speak, @dpryan79 is working through the immediate implications of that pinning update on the bulk branch. Merging this PR and the samtools PR here on the master branch will still have to wait until common.sh lists the updated bioconda-utils version on its master branch.

I imagine that will happen once the migration is complete and the bulk branch has been merged. Alternatively Devon might be convinced to apply the samtools&bcftools updates on the bulk branch — but I suspect it's not really worth doing that and we won't have to wait too much longer to do it on master in the normal way.

[jmarshall]

Note that this pinning migration is still in progress, so the options for bcftools 1.16 are still to wait for bulk to land, or perhaps to apply this PR's changes on the bulk branch so as to deploy a 1.16 package now.

[dpryan79]

I'll probably merge bulk into master tomorrow, I'm just trying to finish up the last couple recipes that have needed patching.

[BiocondaBot]

Package(s) built on Azure are ready for inspection:

Arch	Package	Zip File
linux-64	bcftools-1.16_90bf647c9a.tar.bz2	LinuxArtifacts
linux-64	bcftools-1.16-hfe4b78e_0.tar.bz2	LinuxArtifacts
osx-64	bcftools-1.16-h83fc8ca_0.tar.bz2	OSXArtifacts

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You may also use conda to install these after downloading and extracting the appropriate zip file. From the LinuxArtifacts or OSXArtifacts directories:

conda install -c packages <package name>

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Docker image(s) built (images are in the LinuxArtifacts zip file above):

Package	Tag	Install with docker
bcftools	1.16--hfe4b78e_0	show gzip -dc LinuxArtifacts/images/bcftools:1.16--hfe4b78e_0.tar.gz | docker load

[dpryan79]

I'll quickly double check the htslib pinning on this.