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Update bioconductor-microbiomemarker

Open daydream-boost opened this issue 1 year ago • 7 comments

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daydream-boost avatar Aug 09 '22 10:08 daydream-boost

I have removed galaxyproject source, because can not find microbiomemarker package in it.

@BiocondaBot please fetch artifacts

daydream-boost avatar Aug 10 '22 02:08 daydream-boost

@BiocondaBot please fetch artifacts

daydream-boost avatar Aug 10 '22 02:08 daydream-boost

Package(s) built on Azure are ready for inspection:

Arch Package Zip File
noarch bioconductor-microbiomemarker-1.2.2-r41hdfd78af_0.tar.bz2 LinuxArtifacts

You may also use conda to install these after downloading and extracting the appropriate zip file. From the LinuxArtifacts or OSXArtifacts directories:

conda install -c packages <package name>

Docker image(s) built (images are in the LinuxArtifacts zip file above):

Package Tag Install with docker
bioconductor-microbiomemarker 1.2.2--r41hdfd78af_0
showgzip -dc LinuxArtifacts/images/bioconductor-microbiomemarker:1.2.2--r41hdfd78af_0.tar.gz | docker load

BiocondaBot avatar Aug 10 '22 02:08 BiocondaBot

@BiocondaBot please add label

daydream-boost avatar Aug 10 '22 02:08 daydream-boost

This bioconductor release requires R 4.2, unfortunately, so we'll have to wait until the R migration on conda-forge is at least partially complete.

dpryan79 avatar Aug 10 '22 07:08 dpryan79

When I saw the pkg's github source, the version up to v1.3.2, but it still supports R 4.1.

https://github.com/yiluheihei/microbiomeMarker/blob/9255f9a44de1763428d3c6fb30d445d45cfea25f/DESCRIPTION#L3-L23

daydream-boost avatar Aug 11 '22 03:08 daydream-boost

I'm aware, but individual bioconductor releases are only intended to work with a single minor version of R, regardless of what package authors may intend.

dpryan79 avatar Aug 11 '22 07:08 dpryan79