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biocommons
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Hello, I have been trying to install through docker or locally uta_20210129 1. The latest Docker biocommons/uta does not seem to have any tables 2. when dumping uta_20210129.pgd.gz I followed...
**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#164](https://bitbucket.org/biocommons/uta/issue/164)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- Data in UTA would be more accessible if it were accessible...
When trying to refer to ensembl transcripts we cannot find by version in the 20210129 data release.
20210129 version is seen at http://dl.biocommons.org/uta/ . Is it possible to publish this latest version to dockerhub?
I believe there have been similar questions and I'm uncertain if there was a clear recommendation about how one would go about adding new transcript data into uta for use...
Recently [a new assembly was published](https://www.biorxiv.org/content/10.1101/2021.05.26.445798v1.full.pdf), which looks like a potential successor for GRCh38. It would be nice to get support for it in UTA. I guess we don't have...
I'm importing the postgres dump of uta_20190927. The download and import of the dump take just a couple of minutes but then it gets stuck on the refresh of the...
I'm looking to build a UTA database from a custom reference source (GFF / FASTA). Looking around the docs I wasn't seeing about how to go about doing this. I'm...
# schema changes * drop sqlalchemy * protein assoc in tx record * overhaul genes: use tax_id as primary id * exon set fingerprint table w/enum * schema migration (yoyo,...
**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#195](https://bitbucket.org/biocommons/uta/issue/195)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- UTA historically has aligned transcript and genomic exons even when the...
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Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image