Brad Hart

Cheatsheet request: R

1

Hey there, I love the page... thank you so much!! It is brilliant. I was wondering if it would be worth adding an 'R' cheatsheet? I have attached one that...

sqm2tables.py - All fixes in one place :-)

8

Not an issue - i had a couple of problems and found this data in separate places. Adding here for the next person who needs it. If you have run...

ggTree installation error - part 2

2

Hi Narciso, Unfortunately the solution for ggtree didn't work for me, but I found another way around it. It has a few more steps but it works nicely. 1. Create...

Script to run tormes on HPC clusters

4

Hi all, not an issue, but thought I would share a script I wrote that auto-creates the samples_metadata file from the files you have in your folder and also adds...

[BUG] lxml doesn't install from bioconda rgi-5.2.0

3

Hey guys, just a heads up, when installing from bioconda rgi-5.2.0 doesn't install the lxml dependency. An error is encountered when using auto_load for databases. I installed lxml and then...

error when accessing external to server - Uncaught (in promise) TypeError: Failed to construct 'URL': Invalid URL

1

**Describe the bug** This works fine when using pc run and accessing local host in dev mode, however i have tried to deploy to two separate servers and i get...

Adding contig shortening script for spades assemblies into utils. (could be a good one to add as part of the pipeline in tormes-2.0 if spades/prokka are still going to be...