Brad Hart

Hey mate, Looks like you are running it from root. Try running it again but use sudo before the tormes commands. If that doesn't work you should try installing everything...

Hi galstriker, When did you install Tormes? Narciso has been releasing a few fixes recently and I think one from not too long ago addressed issues found with 'R' versions.

> Dear Sander, > > Sorry for the late reply. > Could you please re-dun thesame analysis by redirecting the screen outputs and errors to a file? Like this: >...

Hi Narciso, it didn't appear to run again, it just created that folder and the error text... does the commands you provided make it run without logging to the shell?

Ah, I see! it outputs the logging to the txt instead of the shell. It is still running, Attached is updated .txt as of this stage [error-tormes.txt](https://github.com/nmquijada/tormes/files/3696062/error-tormes.txt)

Thank you very much by the way for looking into this. Thank you for creating the pipeline as well. It was so easy to install and get running compared to...

HI Narciso, Ok, all done, it looks like by skipping the pangenome it seemed to make it through to the end. I have attached the txt file. [error-tormes.txt](https://github.com/nmquijada/tormes/files/3696219/error-tormes.txt)

Hi Narciso, Yes, it ran perfect without the pangenome. Thank you so much for your responses. It is great pipeline and definitely the most user friendly one I have come...

Narciso! Your pipeline does NOT have any bugs. I worked out what the issue is. I didn't install the quast files. If anyone else has this problem... Make sure you...

Hi Plantman, Try just using the directory name on its own for the output. (same for the meta data) Tormes will create the output directory for you as well. So...